HL_3J78_051
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 3J78|1|2S|C|648
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_051 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.2358
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
3J78|1|2S|U|640
3J78|1|2S|C|641
3J78|1|2S|U|642
3J78|1|2S|U|643
3J78|1|2S|G|644
3J78|1|2S|A|645
3J78|1|2S|A|646
3J78|1|2S|A|647
3J78|1|2S|C|648
3J78|1|2S|A|649
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 78
- 60S ribosomal protein L28
- Chain 82
- 60S ribosomal protein L32
- Chain L3
- 60S ribosomal protein L3
Coloring options: