HL_3J78_066
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 3J78|1|2S|A|1350, 3J78|1|2S|U|1351, 3J78|1|2S|G|1354, 3J78|1|2S|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_066 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.4824
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3J78|1|2S|U|1347
3J78|1|2S|U|1348
3J78|1|2S|G|1349
3J78|1|2S|A|1350
3J78|1|2S|U|1351
3J78|1|2S|A|1352
3J78|1|2S|U|1353
3J78|1|2S|G|1354
3J78|1|2S|A|1355
3J78|1|2S|U|1356
3J78|1|2S|G|1357
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 68
- 60S ribosomal protein L18
- Chain 82
- 60S ribosomal protein L32
- Chain L4
- 60S ribosomal protein L4
- Chain L6
- 60S ribosomal protein L6
Coloring options: