HL_3J78_069

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

3J78|1|2S|G|1507, 3J78|1|2S|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_069 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3J78|1|2S|A|1506
3J78|1|2S|G|1507
3J78|1|2S|C|1508
3J78|1|2S|A|1509
3J78|1|2S|G|1510
3J78|1|2S|U|1511
3J78|1|2S|U|1512

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L17

Chain 69

60S ribosomal protein L19

Chain 89

60S ribosomal protein L39