HL_3J78_093

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

3J78|1|2S|A|2637, 3J78|1|2S|C|2644

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_093 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1811

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

3J78|1|2S|U|2633
3J78|1|2S|U|2634
3J78|1|2S|A|2635
3J78|1|2S|A|2636
3J78|1|2S|A|2637
3J78|1|2S|C|2638
3J78|1|2S|G|2639
3J78|1|2S|A|2640
3J78|1|2S|U|2641
3J78|1|2S|A|2642
3J78|1|2S|A|2643
3J78|1|2S|C|2644
3J78|1|2S|G|2645

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 60

60S ribosomal protein L10

Chain 71

60S ribosomal protein L21

Chain 79

60S ribosomal protein L29