HL_3J78_096
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UUCAGUGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_096 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1538
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J78|1|2S|U|2724
3J78|1|2S|U|2725
3J78|1|2S|C|2726
3J78|1|2S|A|2727
3J78|1|2S|G|2728
3J78|1|2S|U|2729
3J78|1|2S|G|2730
3J78|1|2S|U|2731
3J78|1|2S|G|2732
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 68
- 60S ribosomal protein L18
- Chain 71
- 60S ribosomal protein L21
- Chain 78
- 60S ribosomal protein L28
- Chain 92
- 60S ribosomal protein L42
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