HL_3J78_119
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 3J78|1|PT|G|19, 3J78|1|PT|G|20, 3J78|1|PT|U|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_119 not in the Motif Atlas
- Homologous match to HL_4V9Q_213
- Geometric discrepancy: 0.2615
- The information below is about HL_4V9Q_213
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_63054.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
3J78|1|PT|C|13
3J78|1|PT|A|14
3J78|1|PT|G|15
3J78|1|PT|C|16
3J78|1|PT|C|17
3J78|1|PT|U|18|||A
3J78|1|PT|G|19
3J78|1|PT|G|20
3J78|1|PT|U|21
3J78|1|PT|A|22
3J78|1|PT|G|23
Current chains
- Chain PT
- P/E-site initiator transfer RNAfMet
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 61
- 60S ribosomal protein L11
- Chain 92
- 60S ribosomal protein L42
- Chain ET
- Transfer RNA; tRNA
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