HL_3J78_120
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_120 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1858
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
3J78|1|PT|G|32
3J78|1|PT|C|33
3J78|1|PT|U|34
3J78|1|PT|C|35
3J78|1|PT|A|36
3J78|1|PT|U|37
3J78|1|PT|A|38
3J78|1|PT|A|39
3J78|1|PT|C|40
Current chains
- Chain PT
- P/E-site initiator transfer RNAfMet
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain ET
- Transfer RNA; tRNA
- Chain MR
- messenger RNA
Coloring options: