HL_3J78_124
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- 3J78|1|5S|C|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_124 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.2441
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|5S|U|32
3J78|1|5S|U|33
3J78|1|5S|C|34
3J78|1|5S|C|35
3J78|1|5S|C|36
3J78|1|5S|G|37
3J78|1|5S|U|38
3J78|1|5S|C|39
3J78|1|5S|C|40
3J78|1|5S|G|41
3J78|1|5S|A|42
3J78|1|5S|U|43
3J78|1|5S|C|44
3J78|1|5S|A|45
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 61
- 60S ribosomal protein L11
- Chain L5
- 60S ribosomal protein L5
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