HL_3J78_125

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AGCAGCCUGGUAGCU

Length

15 nucleotides

Bulged bases

3J78|1|ET|C|16, 3J78|1|ET|G|19, 3J78|1|ET|G|20, 3J78|1|ET|U|21, 3J78|1|ET|A|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_125 not in the Motif Atlas

Homologous match to HL_4V9I_038

Geometric discrepancy: 0.4284

The information below is about HL_4V9I_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3J78|1|ET|A|11
3J78|1|ET|G|12
3J78|1|ET|C|13
3J78|1|ET|A|14
3J78|1|ET|G|15
3J78|1|ET|C|16
3J78|1|ET|C|17
3J78|1|ET|U|18|||A
3J78|1|ET|G|19
3J78|1|ET|G|20
3J78|1|ET|U|21
3J78|1|ET|A|22
3J78|1|ET|G|23
3J78|1|ET|C|24
3J78|1|ET|U|25

Current chains

Chain ET

P/E-site initiator transfer RNAfMet

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain S1

40S ribosomal protein S1