HL_3J79_007

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

3J79|1|A|G|226, 3J79|1|A|A|227, 3J79|1|A|A|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69480.1

Basepair signature

cWW-R-R-tWH

Number of instances in this motif group

18

Unit IDs

3J79|1|A|G|224
3J79|1|A|U|225
3J79|1|A|G|226
3J79|1|A|A|227
3J79|1|A|A|228
3J79|1|A|A|229
3J79|1|A|G|230
3J79|1|A|G|231
3J79|1|A|C|232

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein uL4

Chain Z

60S ribosomal protein uL24