HL_3J79_012
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAUUGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J79_012 not in the Motif Atlas
- Homologous match to HL_5TBW_012
- Geometric discrepancy: 0.4992
- The information below is about HL_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|A|A|551
3J79|1|A|A|552
3J79|1|A|U|572
3J79|1|A|U|573
3J79|1|A|G|574
3J79|1|A|U|575
3J79|1|A|U|576
3J79|1|A|U|577
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain F
- 60S ribosomal protein uL4
- Chain U
- 60S ribosomal protein eL20
- Chain V
- 60S ribosomal protein eL21
Coloring options: