HL_3J79_016

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUCUUUAAAC

Length

12 nucleotides

Bulged bases

3J79|1|A|U|766, 3J79|1|A|A|772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56205.1

Basepair signature

cWW-R-tSH-R-R-R-R

Number of instances in this motif group

26

Unit IDs

3J79|1|A|G|764
3J79|1|A|A|765
3J79|1|A|U|766
3J79|1|A|U|767
3J79|1|A|C|768
3J79|1|A|U|769
3J79|1|A|U|770
3J79|1|A|U|771
3J79|1|A|A|772
3J79|1|A|A|773
3J79|1|A|A|774
3J79|1|A|C|775

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein uL4

Chain L

60S ribosomal protein eL13

Chain P

60S ribosomal protein eL15

Chain Z

60S ribosomal protein uL24