HL_3J79_031

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGUGAUUG

Length

9 nucleotides

Bulged bases

3J79|1|A|G|1656, 3J79|1|A|U|1660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32608.1

Basepair signature

cWW-cWW-R-R

Number of instances in this motif group

2

Unit IDs

3J79|1|A|C|1654
3J79|1|A|U|1655
3J79|1|A|G|1656
3J79|1|A|U|1657
3J79|1|A|G|1658
3J79|1|A|A|1659
3J79|1|A|U|1660
3J79|1|A|U|1661
3J79|1|A|G|1662

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein eL19

Chain W

60S ribosomal protein uL22

Chain e

60S ribosomal protein eL39