HL_3J79_055

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAAUAUUAACG

Length

13 nucleotides

Bulged bases

3J79|1|A|A|2976, 3J79|1|A|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38117.1

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

15

Unit IDs

3J79|1|A|U|2972
3J79|1|A|U|2973
3J79|1|A|A|2974
3J79|1|A|A|2975
3J79|1|A|A|2976
3J79|1|A|U|2977
3J79|1|A|A|2978
3J79|1|A|U|2979
3J79|1|A|U|2980
3J79|1|A|A|2981
3J79|1|A|A|2982
3J79|1|A|C|2983
3J79|1|A|G|2984

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 4

60S ribosomal protein eL29

Chain Q

60S ribosomal protein uL16

Chain V

60S ribosomal protein eL21