HL_3J79_067

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUUAAG

Length

16 nucleotides

Bulged bases

3J79|1|A|G|3500, 3J79|1|A|C|3504, 3J79|1|A|U|3506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69076.1

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

3J79|1|A|C|3494
3J79|1|A|U|3495
3J79|1|A|G|3496
3J79|1|A|A|3497
3J79|1|A|A|3498
3J79|1|A|C|3499
3J79|1|A|G|3500
3J79|1|A|C|3501
3J79|1|A|C|3502
3J79|1|A|U|3503
3J79|1|A|C|3504
3J79|1|A|U|3505
3J79|1|A|U|3506
3J79|1|A|A|3507
3J79|1|A|A|3508
3J79|1|A|G|3509

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein uL6

Chain K

60S ribosomal protein uL13

Chain f

60S ribosomal protein eL40