HL_3J79_068

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

3J79|1|A|U|3698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57089.1

Basepair signature

cWW-cSW-R-R-R-R

Number of instances in this motif group

13

Unit IDs

3J79|1|A|G|3697
3J79|1|A|U|3698
3J79|1|A|A|3699
3J79|1|A|G|3700
3J79|1|A|A|3701
3J79|1|A|C|3702
3J79|1|A|G|3703
3J79|1|A|A|3704
3J79|1|A|C|3705

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein eL31

Chain E

60S ribosomal protein uL3

Chain W

60S ribosomal protein uL22