HL_3J79_069

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J79_069 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3536

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

3J79|1|A|A|3740
3J79|1|A|A|3741
3J79|1|A|C|3742
3J79|1|A|U|3748
3J79|1|A|U|3749

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain X

60S ribosomal protein eL22