HL_3J79_071
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J79_071 not in the Motif Atlas
- Homologous match to HL_5TBW_186
- Geometric discrepancy: 0.1062
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
3J79|1|B|G|86
3J79|1|B|G|87
3J79|1|B|A|88
3J79|1|B|G|89
3J79|1|B|A|90
3J79|1|B|C|91
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 60S ribosomal protein uL16
- Chain U
- 60S ribosomal protein eL20
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