HL_3J79_076

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGAAAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J79_076 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3772

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

3J79|1|A|A|962
3J79|1|A|C|963
3J79|1|A|G|964
3J79|1|A|A|965
3J79|1|A|A|966
3J79|1|A|A|967
3J79|1|A|G|968
3J79|1|A|U|969

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein eL19

Chain h

60S ribosomal protein eL43