HL_3J79_078
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGCAAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J79_078 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.2546
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|C|C|51
3J79|1|C|A|52
3J79|1|C|G|53
3J79|1|C|C|54
3J79|1|C|A|55
3J79|1|C|A|56
3J79|1|C|A|57
3J79|1|C|A|58
3J79|1|C|U|59
3J79|1|C|G|60
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein uL23
- Chain c
- 60S ribosomal protein eL37
- Chain e
- 60S ribosomal protein eL39
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