HL_3J7P_007

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

3J7P|1|5|G|232, 3J7P|1|5|U|233, 3J7P|1|5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69480.1

Basepair signature

cWW-R-R-tWH

Number of instances in this motif group

18

Unit IDs

3J7P|1|5|G|230
3J7P|1|5|U|231
3J7P|1|5|G|232
3J7P|1|5|U|233
3J7P|1|5|G|234
3J7P|1|5|A|235
3J7P|1|5|G|236
3J7P|1|5|G|237
3J7P|1|5|C|238

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

Ribosomal protein uL4

Chain Y

Ribosomal protein uL24