HL_3J7P_084

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCAGGGUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72253.1

Basepair signature

cWW-bif-R-R-R-R-R

Number of instances in this motif group

42

Unit IDs

3J7P|1|S2|A|415
3J7P|1|S2|U|416
3J7P|1|S2|C|417
3J7P|1|S2|A|418
3J7P|1|S2|G|419
3J7P|1|S2|G|420
3J7P|1|S2|G|421
3J7P|1|S2|U|422
3J7P|1|S2|U|423

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

Ribosomal protein uS5

Chain SJ

Ribosomal protein uS4

Chain SL

Ribosomal protein uS17

Chain SW

Ribosomal protein uS8

Chain SX

Ribosomal protein uS12