HL_3J7P_087

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCGACCCGGG

Length

11 nucleotides

Bulged bases

3J7P|1|S2|A|500, 3J7P|1|S2|C|502, 3J7P|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22971.1

Basepair signature

cWW-cWW-tSH-R-R-R

Number of instances in this motif group

2

Unit IDs

3J7P|1|S2|C|496
3J7P|1|S2|C|497
3J7P|1|S2|C|498
3J7P|1|S2|G|499
3J7P|1|S2|A|500
3J7P|1|S2|C|501
3J7P|1|S2|C|502
3J7P|1|S2|C|503
3J7P|1|S2|G|504
3J7P|1|S2|G|505
3J7P|1|S2|G|506

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SY

Ribosomal protein eS24