HL_3J7P_096

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

3J7P|1|S2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56205.1

Basepair signature

cWW-R-tSH-R-R-R-R

Number of instances in this motif group

26

Unit IDs

3J7P|1|S2|G|1054
3J7P|1|S2|A|1055
3J7P|1|S2|U|1056
3J7P|1|S2|C|1057
3J7P|1|S2|A|1058
3J7P|1|S2|G|1059
3J7P|1|S2|A|1060
3J7P|1|S2|U|1061
3J7P|1|S2|A|1062
3J7P|1|S2|C|1063
3J7P|1|S2|C|1064

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein uS11

Chain Sa

Ribosomal protein eS26