HL_3J7Q_021

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

3J7Q|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Q_021 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.2583

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J7Q|1|5|G|1627
3J7Q|1|5|C|1628
3J7Q|1|5|G|1629
3J7Q|1|5|A|1630
3J7Q|1|5|A|1631
3J7Q|1|5|A|1632
3J7Q|1|5|G|1633
3J7Q|1|5|A|1634
3J7Q|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain N

Ribosomal protein eL15

Chain j

Ribosomal protein eL37