3D structure

PDB id
3J7Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the large ribosomal subunit from human mitochondria
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
ACUUACACU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J7Y_042 not in the Motif Atlas
Geometric match to HL_5T83_002
Geometric discrepancy: 0.2344
The information below is about HL_5T83_002
Detailed Annotation
Anticodon loop related
Broad Annotation
Guanidine riboswitch aptamer P2 hairpin
Motif group
HL_06059.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

3J7Y|1|B|A|1630
3J7Y|1|B|C|1631
3J7Y|1|B|U|1632
3J7Y|1|B|U|1633
3J7Y|1|B|A|1634
3J7Y|1|B|C|1635
3J7Y|1|B|A|1636
3J7Y|1|B|C|1637
3J7Y|1|B|U|1638

Current chains

Chain B
mt-tRNAVal

Nearby chains

Chain 6
mL38
Chain 8
mL40
Chain P
uL18
Chain W
bL27
Chain f
mL48
Chain t
unknown protein

Coloring options:


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