HL_3J81_019

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J81_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2048

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3J81|1|2|A|828
3J81|1|2|U|829
3J81|1|2|U|830
3J81|1|2|U|831
3J81|1|2|U|832
3J81|1|2|G|833
3J81|1|2|U|834
3J81|1|2|U|835
3J81|1|2|G|836
3J81|1|2|G|837
3J81|1|2|U|838
3J81|1|2|U|839
3J81|1|2|U|840
3J81|1|2|C|841
3J81|1|2|U|842

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

uS17