Motif HL_88364.1 Version HL_88364.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_205 | 4V88 | 0.5343 | 0 | Pseudoknot geometry | A6 | SSU rRNA | A | 829 | U | 830 | U | 831 | U | 832 | U | 833 | G | 834 | U | 835 | U | 836 | G | 837 | G | 838 | U | 839 | U | 840 | U | 841 | C | 842 | U | 843 | cWW | |
| 2 | HL_4JF2_002 | 4JF2 | 0.0000 | 1 | A | PreQ1-II Riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 32 | U | 34 | U | 35 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW | |
| 3 | HL_5D5L_002 | 5D5L | 0.4190 | 1 | A | PreQ1-II riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 32 | A | 33 | U | 35 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUUAUUUCCUUUGA | 2 |
| AUUUUGUUGGUUUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUUAUUUCCUUUG | 2 |
| UUUUGUUGGUUUC | 1 |
- Annotations
-
- (2)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.42 | Avg 0.34 | Max 0.56
Coloring options: