HL_3J81_026
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 3J81|1|2|A|1195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J81_026 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.3208
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J81|1|2|G|1187
3J81|1|2|A|1188
3J81|1|2|C|1189
3J81|1|2|U|1190
3J81|1|2|C|1191
3J81|1|2|A|1192
3J81|1|2|A|1193
3J81|1|2|C|1194
3J81|1|2|A|1195
3J81|1|2|C|1196
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain Q
- uS9
- Chain U
- uS10
- Chain d
- uS14
- Chain i
- eIF1A
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