HL_3J81_029

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

3J81|1|2|U|1313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J81_029 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1304

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3J81|1|2|C|1308
3J81|1|2|U|1309
3J81|1|2|U|1310
3J81|1|2|A|1311
3J81|1|2|A|1312
3J81|1|2|U|1313
3J81|1|2|U|1314
3J81|1|2|G|1315

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

eS17