HL_3J8G_011

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

3J8G|1|B|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J8G_011 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1752

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

3J8G|1|B|C|305
3J8G|1|B|U|306
3J8G|1|B|G|307
3J8G|1|B|G|308
3J8G|1|B|A|309
3J8G|1|B|A|310
3J8G|1|B|A|311
3J8G|1|B|G|312

Current chains

Chain B

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24