HL_3J8G_038

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

3J8G|1|B|A|1453, 3J8G|1|B|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J8G_038 not in the Motif Atlas

Geometric match to HL_4V88_197

Geometric discrepancy: 0.3192

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J8G|1|B|G|1450
3J8G|1|B|C|1451
3J8G|1|B|G|1452
3J8G|1|B|A|1453
3J8G|1|B|C|1454
3J8G|1|B|G|1455
3J8G|1|B|G|1456
3J8G|1|B|U|1457
3J8G|1|B|U|1458
3J8G|1|B|G|1459
3J8G|1|B|U|1460
3J8G|1|B|C|1461

Current chains

Chain B

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17