HL_3J92_001

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCGGUAG

Length

9 nucleotides

Bulged bases

3J92|1|2|C|16, 3J92|1|2|G|18, 3J92|1|2|G|19, 3J92|1|2|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_001 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.175

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

3J92|1|2|C|13
3J92|1|2|A|14
3J92|1|2|G|15
3J92|1|2|C|16
3J92|1|2|G|18
3J92|1|2|G|19
3J92|1|2|U|20
3J92|1|2|A|21
3J92|1|2|G|22

Current chains

Chain 2

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

uL5