HL_3J92_017

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

3J92|1|5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_017 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0848

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3J92|1|5|U|1317
3J92|1|5|C|1318
3J92|1|5|U|1319
3J92|1|5|U|1320
3J92|1|5|G|1321
3J92|1|5|A|1322
3J92|1|5|A|1323
3J92|1|5|A|1324
3J92|1|5|C|1325
3J92|1|5|A|1326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32