HL_3J92_021

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

3J92|1|5|C|1439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_021 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2899

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3J92|1|5|C|1436
3J92|1|5|C|1437
3J92|1|5|U|1438
3J92|1|5|C|1439
3J92|1|5|U|1440
3J92|1|5|C|1441
3J92|1|5|C|1442
3J92|1|5|A|1443
3J92|1|5|G|1444
3J92|1|5|U|1445
3J92|1|5|C|1446
3J92|1|5|C|1447
3J92|1|5|G|1448

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain F

eL30

Chain Q

eL18