HL_3J92_026

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

3J92|1|5|C|1676, 3J92|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_026 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.2434

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3J92|1|5|C|1675
3J92|1|5|C|1676
3J92|1|5|U|1677
3J92|1|5|C|1678
3J92|1|5|A|1679
3J92|1|5|G|1680

Current chains

Chain 5

28S rRNA

Nearby chains

Chain a

uL15

Chain b

eL29

Chain o

eL42