HL_3J92_055

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

3J92|1|5|A|3876, 3J92|1|5|A|3877, 3J92|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_055 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0767

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3J92|1|5|G|3873
3J92|1|5|G|3874
3J92|1|5|G|3875
3J92|1|5|A|3876
3J92|1|5|A|3877
3J92|1|5|C|3878
3J92|1|5|G|3879
3J92|1|5|G|3880
3J92|1|5|G|3881
3J92|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32