HL_3J92_067

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAGCAGAAU

Length

9 nucleotides

Bulged bases

3J92|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_067 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3406

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3J92|1|5|A|4473
3J92|1|5|A|4474
3J92|1|5|G|4475
3J92|1|5|C|4476
3J92|1|5|A|4477
3J92|1|5|G|4478
3J92|1|5|A|4479
3J92|1|5|A|4480
3J92|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40

Chain w

Listerin