HL_3J92_073

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_073 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.0664

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J92|1|5|G|4907
3J92|1|5|G|4908
3J92|1|5|A|4909
3J92|1|5|G|4910
3J92|1|5|A|4911
3J92|1|5|G|4912
3J92|1|5|G|4913
3J92|1|5|C|4914

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13