HL_3J9M_003

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_003 not in the Motif Atlas

Homologous match to HL_5J7L_147

Geometric discrepancy: 0.1091

The information below is about HL_5J7L_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3J9M|1|A|C|1786
3J9M|1|A|G|1787
3J9M|1|A|C|1788
3J9M|1|A|A|1789
3J9M|1|A|A|1790
3J9M|1|A|G|1791

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m

Chain 9

mL41

Chain F

uL4m

Chain U

uL23m