HL_3J9M_009

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAGCAAAA

Length

10 nucleotides

Bulged bases

3J9M|1|A|A|1957, 3J9M|1|A|A|1961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_009 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.2312

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

3J9M|1|A|U|1954
3J9M|1|A|G|1955
3J9M|1|A|U|1956
3J9M|1|A|A|1957
3J9M|1|A|G|1958
3J9M|1|A|C|1959
3J9M|1|A|A|1960
3J9M|1|A|A|1961
3J9M|1|A|A|1962
3J9M|1|A|A|1963

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m

Chain E

uL3m

Chain T

uL22m