HL_3J9M_010

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

3J9M|1|A|A|1991, 3J9M|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_010 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.28

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J9M|1|A|G|1988
3J9M|1|A|C|1989
3J9M|1|A|G|1990
3J9M|1|A|A|1991
3J9M|1|A|C|1992
3J9M|1|A|A|1993
3J9M|1|A|A|1994
3J9M|1|A|A|1995
3J9M|1|A|C|1996

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m

Chain D

uL2m