HL_3J9M_013

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

3J9M|1|A|A|2110, 3J9M|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_013 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.2209

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

3J9M|1|A|G|2107
3J9M|1|A|G|2108
3J9M|1|A|A|2109
3J9M|1|A|A|2110
3J9M|1|A|C|2111
3J9M|1|A|A|2112
3J9M|1|A|G|2113
3J9M|1|A|C|2114

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

uL10m

Chain N

uL16m

Chain o

mL63