HL_3J9M_015

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

3J9M|1|A|A|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_015 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2183

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J9M|1|A|C|2175
3J9M|1|A|C|2176
3J9M|1|A|U|2177
3J9M|1|A|A|2178
3J9M|1|A|A|2179
3J9M|1|A|A|2180
3J9M|1|A|A|2181
3J9M|1|A|G|2182
3J9M|1|A|C|2183
3J9M|1|A|A|2184
3J9M|1|A|G|2185

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

uL11m

Chain t

Unknown protein/protein extension