HL_3J9M_018

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAACAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_018 not in the Motif Atlas

Geometric match to HL_4U7U_001

Geometric discrepancy: 0.3219

The information below is about HL_4U7U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

3J9M|1|A|A|2319
3J9M|1|A|A|2320
3J9M|1|A|A|2321
3J9M|1|A|C|2322
3J9M|1|A|A|2323
3J9M|1|A|U|2324

Current chains

Chain A

16S rRNA

Nearby chains

Chain 0

bL32m

Chain O

bL17m

Chain s

mL65 (mS30)