HL_3J9M_022

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

3J9M|1|A|A|2500, 3J9M|1|A|C|2501, 3J9M|1|A|C|2502, 3J9M|1|A|A|2506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_022 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0852

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3J9M|1|A|U|2497
3J9M|1|A|U|2498
3J9M|1|A|U|2499
3J9M|1|A|A|2500
3J9M|1|A|C|2501
3J9M|1|A|C|2502
3J9M|1|A|A|2503
3J9M|1|A|A|2504
3J9M|1|A|A|2505
3J9M|1|A|A|2506
3J9M|1|A|A|2507

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m

Chain D

uL2m