HL_3J9M_026

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

3J9M|1|A|U|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_026 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2301

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3J9M|1|A|C|2612
3J9M|1|A|U|2613
3J9M|1|A|U|2614
3J9M|1|A|A|2615
3J9M|1|A|A|2616
3J9M|1|A|A|2617
3J9M|1|A|U|2618
3J9M|1|A|A|2619
3J9M|1|A|G|2620

Current chains

Chain A

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain L

uL14m