HL_3J9M_028

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAACAGUAACCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_028 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3654

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

3J9M|1|A|A|2753
3J9M|1|A|A|2754
3J9M|1|A|A|2755
3J9M|1|A|C|2756
3J9M|1|A|A|2757
3J9M|1|A|G|2758
3J9M|1|A|U|2759
3J9M|1|A|A|2760
3J9M|1|A|A|2792
3J9M|1|A|C|2793
3J9M|1|A|C|2794
3J9M|1|A|U|2795

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

bL9m

Chain X

bL28m