HL_3J9M_029

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

3J9M|1|A|G|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_029 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1065

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3J9M|1|A|U|2812
3J9M|1|A|U|2813
3J9M|1|A|G|2814
3J9M|1|A|G|2815
3J9M|1|A|G|2816
3J9M|1|A|G|2817
3J9M|1|A|C|2818
3J9M|1|A|G|2819
3J9M|1|A|A|2820

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

uL16m

Chain W

bL27m