HL_3J9M_034

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

3J9M|1|A|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_034 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1827

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

3J9M|1|A|U|3015
3J9M|1|A|G|3016
3J9M|1|A|C|3017
3J9M|1|A|A|3018
3J9M|1|A|G|3019
3J9M|1|A|C|3020
3J9M|1|A|C|3021
3J9M|1|A|G|3022

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

bL36m